IS292: a novel insertion element from Agrobacterium.
Identifieur interne : 004A80 ( Main/Exploration ); précédent : 004A79; suivant : 004A81IS292: a novel insertion element from Agrobacterium.
Auteurs : C. Ponsonnet [France] ; P. Normand ; G. Pilate ; X. NesmeSource :
- Microbiology (Reading, England) [ 1350-0872 ] ; 1995.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), Amorces ADN (génétique), Cartographie de restriction (MeSH), Données de séquences moléculaires (MeSH), Gènes bactériens (MeSH), Protéines bactériennes (génétique), Rhizobium (génétique), Similitude de séquences d'acides aminés (MeSH), Spécificité d'espèce (MeSH), Séquence d'acides aminés (MeSH), Séquence nucléotidique (MeSH), Éléments transposables d'ADN (MeSH).
- MESH :
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Bacterial Proteins (genetics), Base Sequence (MeSH), DNA Primers (genetics), DNA Transposable Elements (MeSH), DNA, Bacterial (genetics), Genes, Bacterial (MeSH), Molecular Sequence Data (MeSH), Restriction Mapping (MeSH), Rhizobium (genetics), Sequence Homology, Amino Acid (MeSH), Species Specificity (MeSH).
- MESH :
- chemical , genetics : Bacterial Proteins, DNA Primers, DNA, Bacterial.
- genetics : Rhizobium.
- Amino Acid Sequence, Base Sequence, DNA Transposable Elements, Genes, Bacterial, Molecular Sequence Data, Restriction Mapping, Sequence Homology, Amino Acid, Species Specificity.
Abstract
A new insertion sequence, IS292, located in the 6b gene of a nopaline-type Agrobacterium strain (X88-292) isolated from poplar was identified and sequenced. IS292 is 2494 bp long, has 21 bp inverted terminal repeats with two mismatches, and generates 10 bp direct repeats upon integration. No sequence similarity was found between IS292 and other insertion elements associated with Agrobacterium, but it shows strong similarity with ISR/1 from Rhizobium leguminosarum bv. viciae. The occurrence of IS292-like sequences in various Agrobacterium isolates, especially different Agrobacterium strains isolated from the same biotope, was demonstrated by DNA hybridization.
DOI: 10.1099/13500872-141-4-853
PubMed: 7773388
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Ponsonnet</name><affiliation wicri:level="4"><nlm:affiliation>Laboratoire d'Ecologie Microbienne du Sol, Université Claude Bernard Lyon 1, Villeurbanne, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Laboratoire d'Ecologie Microbienne du Sol, Université Claude Bernard Lyon 1, Villeurbanne</wicri:regionArea><placeName><region type="region" nuts="2">Auvergne-Rhône-Alpes</region><region type="old region" nuts="2">Rhône-Alpes</region><settlement type="city">Villeurbanne</settlement><settlement type="city" wicri:auto="agglo">Lyon</settlement></placeName><orgName type="university">Université Claude Bernard Lyon 1</orgName></affiliation></author><author><name sortKey="Normand, P" sort="Normand, P" uniqKey="Normand P" first="P" last="Normand">P. Normand</name></author><author><name sortKey="Pilate, G" sort="Pilate, G" uniqKey="Pilate G" first="G" last="Pilate">G. 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Pilate</name></author><author><name sortKey="Nesme, X" sort="Nesme, X" uniqKey="Nesme X" first="X" last="Nesme">X. Nesme</name></author></analytic><series><title level="j">Microbiology (Reading, England)</title><idno type="ISSN">1350-0872</idno><imprint><date when="1995" type="published">1995</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term><term>Bacterial Proteins (genetics)</term><term>Base Sequence (MeSH)</term><term>DNA Primers (genetics)</term><term>DNA Transposable Elements (MeSH)</term><term>DNA, Bacterial (genetics)</term><term>Genes, Bacterial (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Restriction Mapping (MeSH)</term><term>Rhizobium (genetics)</term><term>Sequence Homology, Amino Acid (MeSH)</term><term>Species Specificity (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term><term>Amorces ADN (génétique)</term><term>Cartographie de restriction (MeSH)</term><term>Données de séquences moléculaires (MeSH)</term><term>Gènes bactériens (MeSH)</term><term>Protéines bactériennes (génétique)</term><term>Rhizobium (génétique)</term><term>Similitude de séquences d'acides aminés (MeSH)</term><term>Spécificité d'espèce (MeSH)</term><term>Séquence d'acides aminés (MeSH)</term><term>Séquence nucléotidique (MeSH)</term><term>Éléments transposables d'ADN (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Bacterial Proteins</term><term>DNA Primers</term><term>DNA, Bacterial</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Rhizobium</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN bactérien</term><term>Amorces ADN</term><term>Protéines bactériennes</term><term>Rhizobium</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Base Sequence</term><term>DNA Transposable Elements</term><term>Genes, Bacterial</term><term>Molecular Sequence Data</term><term>Restriction Mapping</term><term>Sequence Homology, Amino Acid</term><term>Species Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cartographie de restriction</term><term>Données de séquences moléculaires</term><term>Gènes bactériens</term><term>Similitude de séquences d'acides aminés</term><term>Spécificité d'espèce</term><term>Séquence d'acides aminés</term><term>Séquence nucléotidique</term><term>Éléments transposables d'ADN</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A new insertion sequence, IS292, located in the 6b gene of a nopaline-type Agrobacterium strain (X88-292) isolated from poplar was identified and sequenced. IS292 is 2494 bp long, has 21 bp inverted terminal repeats with two mismatches, and generates 10 bp direct repeats upon integration. No sequence similarity was found between IS292 and other insertion elements associated with Agrobacterium, but it shows strong similarity with ISR/1 from Rhizobium leguminosarum bv. viciae. The occurrence of IS292-like sequences in various Agrobacterium isolates, especially different Agrobacterium strains isolated from the same biotope, was demonstrated by DNA hybridization.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">7773388</PMID><DateCompleted><Year>1995</Year><Month>07</Month><Day>10</Day></DateCompleted><DateRevised><Year>2020</Year><Month>08</Month><Day>26</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">1350-0872</ISSN><JournalIssue CitedMedium="Print"><Volume>141 ( Pt 4)</Volume><PubDate><Year>1995</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Microbiology (Reading, England)</Title><ISOAbbreviation>Microbiology (Reading)</ISOAbbreviation></Journal><ArticleTitle>IS292: a novel insertion element from Agrobacterium.</ArticleTitle><Pagination><MedlinePgn>853-61</MedlinePgn></Pagination><Abstract><AbstractText>A new insertion sequence, IS292, located in the 6b gene of a nopaline-type Agrobacterium strain (X88-292) isolated from poplar was identified and sequenced. IS292 is 2494 bp long, has 21 bp inverted terminal repeats with two mismatches, and generates 10 bp direct repeats upon integration. No sequence similarity was found between IS292 and other insertion elements associated with Agrobacterium, but it shows strong similarity with ISR/1 from Rhizobium leguminosarum bv. viciae. The occurrence of IS292-like sequences in various Agrobacterium isolates, especially different Agrobacterium strains isolated from the same biotope, was demonstrated by DNA hybridization.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ponsonnet</LastName><ForeName>C</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Laboratoire d'Ecologie Microbienne du Sol, Université Claude Bernard Lyon 1, Villeurbanne, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Normand</LastName><ForeName>P</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Pilate</LastName><ForeName>G</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Nesme</LastName><ForeName>X</ForeName><Initials>X</Initials></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>L29283</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Microbiology (Reading)</MedlineTA><NlmUniqueID>9430468</NlmUniqueID><ISSNLinking>1350-0872</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D001426">Bacterial Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D017931">DNA Primers</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004251">DNA Transposable Elements</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><GeneSymbolList><GeneSymbol>6b</GeneSymbol></GeneSymbolList><MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001426" MajorTopicYN="N">Bacterial Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017931" MajorTopicYN="N">DNA Primers</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004251" MajorTopicYN="Y">DNA Transposable Elements</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005798" MajorTopicYN="N">Genes, Bacterial</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015183" MajorTopicYN="N">Restriction Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012231" MajorTopicYN="N">Rhizobium</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017386" MajorTopicYN="N">Sequence Homology, Amino Acid</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>1995</Year><Month>4</Month><Day>1</Day></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>1995</Year><Month>4</Month><Day>1</Day><Hour>0</Hour><Minute>1</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>1995</Year><Month>4</Month><Day>1</Day><Hour>0</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">7773388</ArticleId><ArticleId IdType="doi">10.1099/13500872-141-4-853</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>France</li></country><region><li>Auvergne-Rhône-Alpes</li><li>Rhône-Alpes</li></region><settlement><li>Lyon</li><li>Villeurbanne</li></settlement><orgName><li>Université Claude Bernard Lyon 1</li></orgName></list><tree><noCountry><name sortKey="Nesme, X" sort="Nesme, X" uniqKey="Nesme X" first="X" last="Nesme">X. Nesme</name><name sortKey="Normand, P" sort="Normand, P" uniqKey="Normand P" first="P" last="Normand">P. Normand</name><name sortKey="Pilate, G" sort="Pilate, G" uniqKey="Pilate G" first="G" last="Pilate">G. Pilate</name></noCountry><country name="France"><region name="Auvergne-Rhône-Alpes"><name sortKey="Ponsonnet, C" sort="Ponsonnet, C" uniqKey="Ponsonnet C" first="C" last="Ponsonnet">C. Ponsonnet</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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